NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000248

Scaffold Ga0208050_1000248


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000248 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9681
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001640Metagenome / Metatranscriptome659Y
F009808Metagenome312N
F052594Metagenome / Metatranscriptome142N
F054865Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0208050_100024810F009808N/AMKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQSTGAEFYAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPKTRRRRLVKETTTTNITSTQPIKFTMAVCFMLTVAYLPAQNNHFFAYNTMSLEKIGNKQLERRYYSEADESYTVDTITYDMLSGINLWDGYSRTTYDNTMFMTYGTQNFEYFPLAGVWKYKNKYYDYYDLLKFVSKYVKRNFLNKKINYGKIRRH
Ga0208050_100024811F054865N/AMVLMEVKTKRFIIKYREGIVSVAANDVAEAIERFKELRIETTAKELTIMPADEMHKRREELFQKE
Ga0208050_10002483F001640N/AMRYLFLFLPLFSFAQDVVKDTVYIQKQGNIYYIIQQTTLSDSTVTGSKQILGDSATAIQSLVTDAERQSNTLAIHAKPIITKGKAVQRINYYNDLHVQISGKPVYFTTAQRDTAKFLGDWKLNFNGEIIDGKIELNNNKRLIFNPDNGKVYSISTNLLLSTFTNQVSFAFNGVKYDLYKYADGKFATVDGDVRLIKLE
Ga0208050_10002487F052594GGAMAAKTYGLDKKQIALCEAMIAKYPKGIKTNNVVSSASTLVSFYNSKDERNKQFYQYMNPERMVSLLWQVVKINNEKEDVKESAVRLLNKLLQDIVVN
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