Scaffold Ga0208050_1000170

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000170
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12726
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (53.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009141	Metagenome / Metatranscriptome	322	Y
F014614	Metagenome / Metatranscriptome	261	Y
F021513	Metagenome / Metatranscriptome	218	Y
F055671	Metagenome	138	Y
F090297	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100017017	F090297	N/A	MYEPFQAKVANTDLSPWYYAVGWARHSLQLQITRYKGLGLNTNYEEKQVAQLLELEQFLKMSWDQWMESLLPGETAQEVK
Ga0208050_100017019	F014614	N/A	MTDWYADYYRQSRGYNDNDLRELRSVPRKPSTEVPDVFKHRFADPAEYDAWVEERRRAYF
Ga0208050_100017020	F009141	N/A	MVPFYRSYLLGGKLVYLDKLSELSDSELNMLNIETMASLEEARRDYDAIENKQSEEGGSVYRRLKVAGYFQAAIKLELQN
Ga0208050_100017021	F021513	N/A	MSMYVLSESQFDQISKALEAARFALETSQHVQLDLTKPKQTIPLPAGEKIVRATSVQKAQSQSKTRKSSRKGKRGVAVLNEGQVLEIKRQIASGGKSVAKIARDFGVHVTTINCIKSGKTWKHVALQQPTPVVVAD
Ga0208050_10001703	F055671	N/A	MTDRLLTLAALLTACAVFAMGADNAQRLERCESAGRTTAECRLLVLGR