Scaffold Ga0208050_1000089

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000089
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21542
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F002356	Metagenome / Metatranscriptome	567	N
F003660	Metagenome / Metatranscriptome	474	Y
F004519	Metagenome / Metatranscriptome	434	Y
F007111	Metagenome / Metatranscriptome	357	N
F060863	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100008911	F060863	N/A	MLIGYGYGYPTNQLLGGGNPFWLAYNQRADADGALPAEAAVNGCLQTRFLNSFQSYAFFVFYSNSWQPFMQRANTDTADAAEVRFINCLEVRMYNLLNA
Ga0208050_100008912	F001129	N/A	MLGQGGTMEFIDGTVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYAMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGFTFL
Ga0208050_100008913	F000847	N/A	MSWIKIKQALLDLANAHPQVNSFGTGDPLAVGTDNTINLRTPSRERIVYPLVFADVQSANTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPSEDWTLSASVSLTRFVESRDDRTAGWQATMTFEIPYSHSVCEIPT
Ga0208050_10000892	F003660	N/A	MNHETKAALKAALVTGYILLATMTGIAFFGRFIFALITN
Ga0208050_100008921	F002356	N/A	MNLKNAIESLRSELRKFSTQKQSFADYKLTDGTVVRVDGDLVAGTAVYVVAEDGTLPAPDGEHVVEGVGTIKTEGGKIVEVIAAEVATPVIEPLPVAAEITPEVAVEVTEEIKEAYPAMTPEVVEAIVAKHLGAIMEELKAAYAEMGKMKEKMSAFASQVETMADIVEKVSELPAEAPKASGSAIVEQRKAAASQNFNALAQALQSLKKKLNP
Ga0208050_100008926	F007111	GGGGG	METTILANGKPVNKFGSGSMKGIDQTALEGIGSVVGPKGGGKSPTHDVLVKWIERVIELAKKNLEAANANAGGTLSASIAPEDIELSAKQIVVAIMANPYWKYVDQGVHGRTSSYISARDSKFRYENKIPPPQAIADWIANKEIAVTPTYSRKLKRMRTKQEQGLVLGRTMAFAIRERGVEGTKFMSNALSPEMIDVLVNTIAETLGKSISVATKL
Ga0208050_100008928	F000557	N/A	MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISIVREMPAKSVLKRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCREGGLFGFFPKKYDGAAHAERAELMKKHAKVGDVWGVVSFFLLSSEPYLKVLSDYSKHLMKTAGELT
Ga0208050_10000899	F004519	N/A	MATFHKYAFPKQSDADKVLALCTGTTAAVALGVLDGFICYDILWEGDAPEEATQYETWPEPCGVHSFLGWDEQYTEDYNQHKSL