NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000076

Scaffold Ga0208050_1000076


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000076 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23719
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001106Metagenome / Metatranscriptome776Y
F003408Metagenome / Metatranscriptome488Y
F009961Metagenome / Metatranscriptome310Y
F012456Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_10000762F003408AGAAGMPELVQTFKSMQKTESEKRKFLASIQGVDLNESSNENKEGSSFEDVKRRALGITASANDVVSLQGSFASEAGFGIGAGLGYSIE
Ga0208050_10000765F009961GGGGGMTVDYKIDAVFELRKFLWNELKTTKIFDPTEYYSDNINMEIIPIIPVQQQPELNQFLSGKKHIVYDKIGLSYEDIWLLCCEKVLFTVYSTDVSDIYEIRNLMTDLFRRMDDSARDINKFKDEPKIKFHSIQVVETSPITPSEELQGFLSSDIILEVKYSRITGPDGRFI
Ga0208050_10000766F012456GGAGLDSSVALLQTASGLERPMAGNKPGIIKDSSVAQISAFLYYQASVLGKLTANKAFQSLFKQTIFNQINKDFGDYIDSSARVKPTALHHVYEWNKTGQETSRLFKLNRMDADGLSFRVTYDFKLSKSSVPSKNKKQRKKYVFATKASVMEAGMPVIIRPRSAERLVFELDGITVFMPKGSSVTVKSPGGRASSNQFRLHYGRYFGGQLVNNSIKASGFQNIFNAKMSKALDTPASIRKVQYSFTAGKIRLEADMELQTAFGGAL
Ga0208050_10000769F001106AGGAGMSFDTLTVAELKEIATEFAVDTEGLKNKKEVIAAMAEEGVTYSVYQKTVKAIEEATEEIEILPVFDPKAQPEDTILVRMTRDNHRYDIHGYSFTKTHPFVAMSEDDAQKIFDTEEGFRLATPKEVQDFYN
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