Scaffold Ga0208050_1000059

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000059
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31475
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (17.02%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004474	Metagenome / Metatranscriptome	436	Y
F032999	Metagenome	178	Y
F057881	Metagenome	135	N
F065712	Metagenome	127	Y
F066704	Metagenome	126	N
F080976	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100005911	F080976	N/A	MKKKPGRPKKDLNINIDTKNVDIKITRKDGVTDVKVDTPKVDVDFHKDSEGKSLKIDTEKVDVSIDKGEVKLDVNEQSGLIGKIAKFLVKRFRK
Ga0208050_100005913	F032999	N/A	MSTAHYEYWWRRSGNFNLDLFNNYLRAKRDAEFQSNLQSKGCQVDNPTENNSSQQSRGCNQEDGHVASVNFKS
Ga0208050_100005925	F066704	N/A	VEFWQHEAYVIAEKVTGGNPIYRDLVSHVYLLVYDIDIPSKDLPRLFARYAYNQYNWRDSQFNKQYRLNDPLPELDNRETDQEYQETEIQLLLDSYMHQSPTDDQELFTKEITKMHLMGMTYREIRNETGISLDTIHLAIKQFKNDLFITYNYSNRDCKSSYELQSP
Ga0208050_100005929	F065712	N/A	MIQAHISESLAGLDKGLIEKFNLIPYESCLPETVFMGMYREEDLVLLAAHIGASTIVWFGSDAKDLPDDWIKFVKGSVNIAVSHQVQETLEAKGVEAIWCPINAVIPHEWPVVPNGDKIFWYSGNAPEYYGESLINEIKERINIPIIRAGHDTFTKEQLVDVYSQCFLNLRLTPHDGCPNVNIEMGLMGRRSIYNGDLPASIPWQSVDDICQSIMREYLSRNVDNAYISNIYHNFVNYERMSTLFI
Ga0208050_100005933	F057881	GAG	MKQLQINLPTSLENCTPEQMTRWLMMAEAMKDNKDDITQFLIFQCQLLSLFSGESISKIKRADVDSIQEASSHMLKLLTSYHYQEPKEYITIQGQEYRFEKTFGHVSTGQIIDLKLIEDISQDPCQALAIMYVERGMEYYQEDDRGRVLNPNEKRYKVFKEHFPGDEFLNFFSFFLDLSEKRKLAILGIQMARQRMEMMKIEQDLKIQNGLIGPLSSIDYPKKWESVWTKLHNSLM
Ga0208050_10000595	F004474	N/A	MNYLLSVENLKKLGLIHNNTDTKLLAVAIKRSQDMHIQPALGTPLFKALLTRVETNTWTPDYLTLMNDYVVPCLVAFVDYRAALLLTEKMTNKATGRVSDENLQANTLTDVHEFRDQLRKDAYFYKERLVGFLMDDQATKYPEYCDMCSDHCNEYVKKDKTGYKPLNWIQ