Scaffold Ga0208050_1000054

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000054
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35753
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (89.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025266	Metagenome	202	Y
F038150	Metagenome	166	Y
F051781	Metagenome	143	Y
F057202	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100005429	F025266	AGGA	MNTRHPEPAIVTHYRATVNAEPPRVCHTCDHYRPDGVCAEYNDTPPPEFASEPGGCALWEWEVPF
Ga0208050_100005439	F057202	AGAAGG	MTLMQQFKRMTRRLTPVEMAATELAEAELHRLEAHSAMEYASSVVSYEDARIKRLRKFLADAEKAV
Ga0208050_100005440	F051781	GAG	MSILEEIKVNRTPTHMVRTPSLTLSREARQSMGKYTERKKLAGEVKAAENDLWQRGQYKTGDGDYTAQVPREGSLRAFSLPSRGNRT
Ga0208050_100005449	F038150	GGA	MTDDDFRRLESKVDKLTDAVGKLILIEERQANQGVRIGAVEAQLSVQDAMLQRVDRKVDQWVNRGVGIWAAVAVVFSLVQFWKK