Scaffold Ga0208050

Basic Information
Taxon OID	3300020498 Open in IMG/M
Scaffold ID	Ga0208050_1000048 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020498 Open in IMG/M

Scaffold ID

Ga0208050_1000048 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40180
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (82.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

40180

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (82.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F047017	Metagenome	150	Y
F057318	Metagenome / Metatranscriptome	136	Y
F067678	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100004816	F067678	GGAG	MPTNYQFDDEDDMDTSTDVVSQLRKVNRALEKRAKELEQELSGLKTQTRQRTVKDVLQAKGLNPKISAFIPQDVDTSEEAIAAWVDEYGDVFGVQPAQTNEAPTQKGPDLSAQHRMNNVVSTGSMPDIDNDMFTKVSGVKTKEDLDALLGFN
Ga0208050_100004818	F047017	GGA	MAKSKSELINDALRVLTSGGKLTDEQKKLLGMSVNTNETGASGILAGTGGGEQTPSMTTWIVNLLKNEPELNNIYVAVRNPDGSFNTTVNAIIDMITASSWYLKNGPTVAANVASRYKFGESFYQQKVNEYKITISGLATAIGLDVTDPTVSSYLTSLSETAFLNGWDENYIENKIVSDDKIIGKINGGAYATAVDELAEYGQLMGFTLSDTTRKDYQRRLIGDVTESGLRARTTPDQIKKEIRDKQALLYPMFADDFAVGRTLWDVTSSQRKVWANLLEKSEDDLDWDDPLWKDGKIFTMTDDKTGKIVARPAWDAEKLVKQDERWQYTENATRLYEGYGIGIMNKFGLAAI
Ga0208050_100004821	F057318	GAGG	MALPKDKNFEVSATGGAGTNGQPARYAAGIDGAQDFYDLQTAAQMSGSNPAFSTVPSPSGQRPFRGDSAAKLVPLDAPTQRPDEDVRTGGSIATDTMYATDSMANSEDADRMRAALPYLSTLAELPQTSNNFRNYVRYLKSVL
Ga0208050_100004839	F001515	GAG	MAKNSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWFKTNNLYIETECYFVKTEAWAPSGLGVTEASYWAFVLQESTLIVPTDVLRYAVKEYGREIKCEIPPNLSKGYLITVDDLMTATRKYKDG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208050_1000048

Overview

Ecosystem & Geography

Associated Families

Sequences