Scaffold Ga0208050_1000010

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000010
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79792
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (79.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001562	Metagenome / Metatranscriptome	670	Y
F004431	Metagenome / Metatranscriptome	438	Y
F005000	Metagenome / Metatranscriptome	415	Y
F013527	Metagenome / Metatranscriptome	270	Y
F037095	Metagenome / Metatranscriptome	168	Y
F103268	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100001012	F000369	AGAAG	MSEIEPAVQFDKMNRVVSELLKGNSATQIASITGLTRKEVLEHIDEWKSIVHNDTNVRDRAREALLGADQHYDMLIKEAWKTVEDADTQGQLNVKSGTLKLIADIETKRIAMLQSVGVLENNEMASQILETERKQEMLVGILKEVTSSCNHCKIEVAKRLSQITGIVEPIIILEKTSDV
Ga0208050_100001026	F005000	N/A	MTHKRIKRFQIEVEFYDNAQLISLKPQYENLLIQDMRGKGYVRVLDIDPAFSIEFTGETWKFLMTLHGVYVGKRKAWQSEGITQSKLIPRNMPQVISNQS
Ga0208050_100001044	F103268	GGAGG	MTNYGIDAMYEIRKHLWQELLSNNIIDQNAYYSDNLGESIIPIIPVQQAPEMNQFLSGKTHIVYDKIGSTYEENWLICCEKISFTIYSVDFAEINIIRNMMMDVFRRMDDSARDLNKSRSTDKIIFHNTLILEMSPTEPSTELAGFLAADVIIEVKYSRTVGPKGRFD
Ga0208050_100001073	F037095	GGAG	MAIKNFDKADLNKDGKVTMQEQILSALGSYGRAFLAAAMALYMTGNTDPKDLVAAGFAAIAPVILKALSPSDHSFGFKSK
Ga0208050_100001089	F004431	N/A	MGELTMTITYSLWDGAQFLGFFTATSADEMLKVVSDLQKVSKNVVAHMRKVEQN
Ga0208050_10000109	F000376	GGAG	MSEYQEKAKECKCCTKHVPLPTKMKEYNNIIMCPTTYYNVIEYKRIWDSYGSRPAGSVRKHFSEYVQSIVESSIDTQN
Ga0208050_100001091	F013527	AGGAG	MAVYEFNAFINVEAESYDDAIDTFQFQLKYGINQNNVYVADIRDLELSE
Ga0208050_100001092	F001562	GGAG	MKSDFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHADYLAEMENE