NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208230_1007190

Scaffold Ga0208230_1007190


Overview

Basic Information
Taxon OID3300020496 Open in IMG/M
Scaffold IDGa0208230_1007190 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1156
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011064Metagenome / Metatranscriptome295N
F017099Metagenome / Metatranscriptome242N

Sequences

Protein IDFamilyRBSSequence
Ga0208230_10071901F011064N/AMGIKILYFQKMARESVLDNFWQEFAAIEWASDMSLGDLFDVSLWTHKLCASLCDLHMISQAPRISQYDLNTVGANILGFVFNIYRCKMDQLNLTLEIDDHWVNFETQRDSEILKSIKRLQEILIANKIMTNEGSDRLRQSYTLCRYRADIQSDQDLGYELSCVLQFIAIKTQLTLRQLAFLRLKIINPTLFERQ
Ga0208230_10071902F017099N/AHVDNPSQVLDLRDETSAILSQIIRCHRAKGVQFQLYYDTPKPWSKPSHKKLIDFSMALNLIQMSHKRIDDKPGNELVASQKVDDNFIRLLSEILRFILAWTVPLTLREIALYKYFKLDPVGYEHDKNLKIGLFDSPPVVECIENRVSIRMEELTRQGENVLVSTPKPEDTNRAQTLVEENEKLEFLSNWFIWE
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