Scaffold Ga0208230_1000769

Overview

Basic Information

• Taxon OID: 3300020496
• Scaffold ID: Ga0208230_1000769
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4497
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024267	Metagenome / Metatranscriptome	206	Y
F028780	Metagenome / Metatranscriptome	190	N
F040591	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208230_10007694	F040591	N/A	MKIKDEYKGKTIVKNTTLGNMTVVVDNIDVNRYRYYVSIGFGYLFEKETTTAPEQCIRYEGIEADEQTEAPRAEPTPKRKRKTNAKANTKRNQG
Ga0208230_10007695	F028780	N/A	MKATLDRYISSHYEELYRYTRYFCSKYNPKLTIDTVISNAYLHCLEINDNTEDVGKVKSYILNSIKRQVIWKNVNSFKDERILASEIAVPDTFDDGEDLNYKIAIEQQYQGWKSSVDIYRDGLTDNVKIAVANAYFDKGLTTARSMAQYFKIPNTSAHYLIADIKNTLKSIHYENKR
Ga0208230_10007699	F024267	N/A	MKIEITHYGHKASYEFEHEDVELEDLIYHIEQLIRLTGYSINGTLEIVNEEQ