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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020496 Open in IMG/M |
| Scaffold ID | Ga0208230_1000035 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21855 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (25.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010833 | Metagenome | 298 | Y |
| F011074 | Metagenome | 295 | N |
| F019816 | Metagenome | 227 | Y |
| F020348 | Metagenome | 224 | N |
| F033030 | Metagenome / Metatranscriptome | 178 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208230_100003510 | F011074 | GGAG | MTAFSGERVRNLNSTIFKQNLVYLMQLVGINNPGEVKLAILEDWIRTEYGGFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKLLENRTFDRLFNPLSVFTKLNSTGIKVWTKEDGALAKKKLMEIITYKANKMDIISAKQYRDEWTEQWLKNQARAVAVALFFDLQIANNKTSFK |
| Ga0208230_100003514 | F033030 | N/A | MEQKKWSAGAWKKQTAKGEVINFTINDVKYSMWANSYKTEDNKQPDYKIYVNDFKPKEDTEGLPF |
| Ga0208230_100003517 | F019816 | N/A | MRELLPFERQMLLAEVYHYAWYNEEAYEDLLAFIKKYENKLDKPVFFNPINNNDTETTNLEPLAYGQDLDTNPGFNEVQ |
| Ga0208230_100003531 | F010833 | N/A | MKYKQLLQLVSSINVVIGNQDTKTQKKLFKIYEKVKAYHEDYQAEVEILRLDNAQTDDKDCLLLDDKGNYKYSKEGIKKLTKDIEALNDKEFDFVIINVVNPQGLEDFTFLEDWTTGIEFNKQEDIEL |
| Ga0208230_10000355 | F020348 | GGA | MEIEHRNFLDQHVGNWHTVQNGYVRNIDLDILKMYEHIYRKYMNADFILTVWCPHCIFDMIKRLYEWYELQPKPKNKKKNG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |