NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208720_1005289

Scaffold Ga0208720_1005289


Overview

Basic Information
Taxon OID3300020495 Open in IMG/M
Scaffold IDGa0208720_1005289 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 20APR2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1803
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017607Metagenome / Metatranscriptome239Y
F021250Metagenome219N

Sequences

Protein IDFamilyRBSSequence
Ga0208720_10052892F017607N/AMNIDTVYFKKDIVNSKEAFNKLEKIRLEAKPTKKVLILDPSNIPPDMMNTIRNNNAFEDEFWRTHNKYKLTPHIDSKPKYTPPYYAPQETGYGSFNYESYLQNLKRI
Ga0208720_10052894F021250N/AIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLVPQRIILISSTANSDSNLIFKTLKNLDWDNDVIDDYNDDLLIMKMDELKTDLNHSKDYKLYKEAWKNFIHCKDIDELDDDELKLLYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMSVPKTIRLNANLLALFKFADSDTVLEDVYPLFSAFIKEQEFKELYEYSTQEPFNALVIDATRGKPIFKKNFDKVLHIS
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