Scaffold Ga0208326

Basic Information
Taxon OID	3300020494 Open in IMG/M
Scaffold ID	Ga0208326_100127 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020494 Open in IMG/M

Scaffold ID

Ga0208326_100127 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4794
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4794

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F020001	Metagenome / Metatranscriptome	226	Y
F034542	Metagenome	174	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208326_1001273	F001215	GAG	MASTSTNKQPCLIDRPFLRGARITSATTTCNPTNPNLTDLIQLVRVGDLPSEDAALVEDITIVSNEGYPDNSGRRSVDLGLYVYAPNQAAPSTSAALMVGRVEVGLSGSTRGVPQSVQLFACNAPTPQVGDTNLLAPIQVGKSEGLYLEKGYILAVGYIGNGSTAVSGGLSPSGITIWSQGGFY
Ga0208326_1001274	F034542	AGGCGG	VSRRRGSDNFNLRPFKATNPAELPKTVKGSDNTKELNSPLPFKRRFRPALNTKDFSVTSEYDYASLWVRWRRGYELSMYSQQAYGGLTYSFKYFVSGTPGLGVFLPGMCFMYPTTRTDMRMHMVGIRPRDSFNFLNFGYSIVSVTDYDADTYAVRLSSNFGAPISFFTGEVLSNRFRADGTDKEYGFNNYTVTAVGINNVPVNPSYAPIFNTLFLSHGENTSWAVVDENTLAIPATGPPAVGEYLTTEMRSQCTCSDFLARENFNLYDASIRRKYPRTRPQNFDPGYYDAGVDGSPRLVDSSDNPGFARTFGFIYINQIYNIPSFSEATYSDPNFFYYQPKWCKHIYAAMWDMQRAYNQGVATGPWLPQPTDEPLNEYYREYFEKELARQTTFLKREKDLVWWQRYSPAKDDMPTHMMYPDMYNMMTKTLNAGDLAALNTLQGRSFEMFTIDEFNPFDPASFVVSTYDGGTYENGVLVNQPTNIFDGGQYLNGVIVPPAGFPSLINGGVY
Ga0208326_1001277	F020001	N/A	MPDDKNLLTIAETAEFLNCSSGFVRKRIALTESNQPGGWPKQIFVNLQPNGAKSLYRVNKNALEEYLKTSSAAKVETAEPETAAACSF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208326_100127

Overview

Ecosystem & Geography

Associated Families

Sequences