Scaffold Ga0208326_100003

Overview

Basic Information

• Taxon OID: 3300020494
• Scaffold ID: Ga0208326_100003
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24382
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003785	Metagenome / Metatranscriptome	468	Y
F006062	Metagenome	382	Y
F064514	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208326_10000313	F006062	GAGG	MKRIFPKGTRPEAMASVVARMVSNLDPLKTWAVEVTEWKKPRTNQQNKFLWGVVYPSILEGGGEALRGWTRDDIHEYMVGEWGGWQTLEGFGRKRMRPLKRSSALTKQEFSDYLLFLETKCLDMGIVIPEPTYEPA
Ga0208326_10000320	F003785	AGGA	VTTVQDLEVTVTSHIDVCAVRYEAIHARLKRLESLLMQVGGAIIVILLTAFGTVTMMWLESIK
Ga0208326_10000326	F064514	N/A	MRTPYQTFNAPPMMNGGRGQRMARMLQMQGQSQQISNNAGAQTDMQYTPPQNAADVNRAPRQFLRQYPKMAKSPGMTNPQGGPDRGGFEYGG