Scaffold Ga0208326_100002

Overview

Basic Information

• Taxon OID: 3300020494
• Scaffold ID: Ga0208326_100002
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 25SEP2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38792
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (59.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038652	Metagenome	165	Y
F080077	Metagenome / Metatranscriptome	115	Y
F091963	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208326_1000021	F080077	AGGAGG	MAINPNQISVAKIYPGNYTNVLRYWHEEKSVVYNNENGTSETLVDQPVGGPVGVIFRPGWIAQQAVGYVDLSYQALGSVNQLEYYTT
Ga0208326_10000255	F038652	N/A	MATTICTIAARELELYALNFSEAHYNSVGKTLSKFYQKGTFNLDRAIAYVERYLLVPAAKDYQREVGSMTTAWNTAFPKPERLAAAESIAHAFVSEFRLGNFW
Ga0208326_10000259	F091963	N/A	MPNHIPFDLYALDCYSLTYHALARFKQLVQNDCTLPPDIVDKIEDEVIPALEYIEGWEPSDADIQAYVDSHGMI