Scaffold Ga0208483_1001078

Overview

Basic Information

• Taxon OID: 3300020492
• Scaffold ID: Ga0208483_1001078
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 01JUN2011 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5026
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010598	Metagenome / Metatranscriptome	301	N
F010668	Metagenome / Metatranscriptome	300	N
F067403	Metagenome / Metatranscriptome	125	N
F091402	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208483_10010781	F091402	N/A	LKYLNLNINFFRLTAARKTGWTPNRVTPLPRVTSTTIPTPDPVTAERNINPRFWMDERSVDTLSQKLTVPLQLQLDSVSDGLKEEYRNLLGSLRDDLYSLKMETAGFHGTLDQRLVNALRTLFNEVPDENISNTTHPNNLDDTIHPTNLLVNWIISGIWF
Ga0208483_10010782	F010668	N/A	MDSGAEHIRETRAKILAAKKEIKEYLRLPEDARGLLILTHGRGNVIFLSQENLPTGAERKYTWEEHSGQYTTQLITVYDYESMYMTAVDVDGNESATFVCLCLAQEKGVRFALERNKRMKNDYTIISNHGGICIVEQTKENGIWLQLPDPDRNLIVKNEKIDMDNGEDLEGRTHMRMCYTCKHPEIHQWPFLALSKWETVEWNEEPRDDSTTPTGDTLSTEEPISKK
Ga0208483_10010785	F067403	N/A	MLIFIKLTVIFQLRKIQIFLSDYALELASTDFNTIYSKNGAVQYEDYTVVYHSGNFHANSFRKLCVNEYTTPFRVTKNMNLTDIFTTYAIQEAWVDLYRSKVSGLLLDKTDYPPVIITVDAEIDAARVHTPVTGSIPNNVLETHYVLGSTRATVVPSNGKMSFFYKPVYNTSIDTIADGLASIIPHMSSVLCLKANQYPNTPKTKKALEDLVNLMLDQVNKEVTLYKALITEWRFKENAIPIAVPNNYTVNMSLDVDDVVRENLINCRRQKNNLKQGFRFITNPIDLALLMFEHELLLAEIKSIRQEILTPLTNPLSLIDLNNLDEQSGSNPTILKHESLSGFYLQVERRLGYIIPAQGESKINSFGRANPFYKVTLMDYLTLGISVFLALGFFVQCSMVTANTIKRWRTERDERIREQERARFRVNRIERSHPPIRETVLPTCENCSEKREMYRTRPPSKVIKRSHRNKGNIPSHLRGSKLDMNQ
Ga0208483_10010786	F010598	N/A	MTTLTTPQRVIIFGGSNAKRIVPFLLKLTKGKGIRIEDRTVSGHSLKNLENLPKNTEVRKKDFIFILSGGNDIFEKHIIIHRHFGKAKKICLTKCIPNPISSIQKIYENLKERLKELKCHKYVITNPYRHLYSCPEHYDVSYYGDILRSQNAANSCLIKTLKEAAIILKVEKLVGISCTEKRKGYPNYMIDSVHFKQKFYLKAAENLCKIVSEKSSTC