Scaffold Ga0208483_1000434

Overview

Basic Information

• Taxon OID: 3300020492
• Scaffold ID: Ga0208483_1000434
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 01JUN2011 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8603
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010620	Metagenome	301	Y
F010918	Metagenome / Metatranscriptome	297	Y
F065557	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208483_100043412	F010620	GAG	MRYILPIIALCLLGSCSDAKKAQYHYKKAVKFGLELVQDSDTIRIISIDSFAVVVNDTIRYEKVIRTKDTVIFFKNIYVPKTRWQTRIEYRYKTQLVKQDVLKYKYIYKAEKKQKAKTNWLLFIIGFGCGIALFFILRLLDKLYNPFK
Ga0208483_100043416	F065557	N/A	YVIFEKNVVMELRSCIQHIFNELLTISKIPAEFTINNFQIINESIVELEAESSKVNDAINSLSPLVANKVLETMTINEVRALASLPPIEGGDMTQSAAAAVVVTPITPTV
Ga0208483_10004346	F010918	N/A	MKRFKVTYNYFDGGKKRIAVRILEALDRDHAIMLMAMWPKLILKVEQYDSRSN