Scaffold Ga0208483_1000290

Overview

Basic Information

• Taxon OID: 3300020492
• Scaffold ID: Ga0208483_1000290
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 01JUN2011 deep hole epilimnion ns (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11176
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013186	Metagenome / Metatranscriptome	273	N
F019139	Metagenome / Metatranscriptome	231	Y
F037224	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208483_10002905	F013186	N/A	MKKLLDNYISRAYPEVRAYTAYFLSKMGSYIDADTVINNSYLHVLTINDYTADEDKVKGYLLNTIKYQILWSTSKSHKDDRVTAIIDNSPDRIEDDELADKIREDRTYSFNKGLIEIYRSEIVDQVQRIVFEAYIDKGYITSRALATYFGITHTSAYYLIKELKQNLNKLQYRYETESVY
Ga0208483_10002906	F019139	N/A	MKTKTEHLGKYITMYNGNFETSFTVTEETAKDHKYYTSKGLGYLFEESTPKAKYKGVDNEEKKEKDSEA
Ga0208483_10002909	F037224	AGGAG	MIVTMHSDTLHKIQVVQAYIHHKTGKHVRIVFNRPDRMQQHLAMLDHAYLIAMGGFKNNNSNDANIGKEK