NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208483_1000290

Scaffold Ga0208483_1000290


Overview

Basic Information
Taxon OID3300020492 Open in IMG/M
Scaffold IDGa0208483_1000290 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 01JUN2011 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11176
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013186Metagenome / Metatranscriptome273N
F019139Metagenome / Metatranscriptome231Y
F037224Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0208483_10002905F013186N/AMKKLLDNYISRAYPEVRAYTAYFLSKMGSYIDADTVINNSYLHVLTINDYTADEDKVKGYLLNTIKYQILWSTSKSHKDDRVTAIIDNSPDRIEDDELADKIREDRTYSFNKGLIEIYRSEIVDQVQRIVFEAYIDKGYITSRALATYFGITHTSAYYLIKELKQNLNKLQYRYETESVY
Ga0208483_10002906F019139N/AMKTKTEHLGKYITMYNGNFETSFTVTEETAKDHKYYTSKGLGYLFEESTPKAKYKGVDNEEKKEKDSEA
Ga0208483_10002909F037224AGGAGMIVTMHSDTLHKIQVVQAYIHHKTGKHVRIVFNRPDRMQQHLAMLDHAYLIAMGGFKNNNSNDANIGKEK

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