Scaffold Ga0208829_100096

Overview

Basic Information

• Taxon OID: 3300020491
• Scaffold ID: Ga0208829_100096
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 19JUL2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11720
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (54.84%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072111	Metagenome	121	N
F093535	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208829_10009621	F072111	GGAGG	MKKQMVLALAIFGHLFLFLFVDSSFEGSSKWKMWAFYGSSLLSVAVWAAYVIHEDDNPKGGAA
Ga0208829_1000969	F093535	N/A	MIIDRMTMVHRNKYLENMKKYQEIENLIADIWYQNPRWPSTFSVCCNGCGNQSRGGRECIYCLEKELSGLTSKEEARQFVSAVRQVLTAEESLREHSKPF