Scaffold Ga0208052_101140

Overview

Basic Information

• Taxon OID: 3300020490
• Scaffold ID: Ga0208052_101140
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 18JUL2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2347
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008496	Metagenome / Metatranscriptome	332	Y
F016662	Metagenome / Metatranscriptome	245	Y
F043404	Metagenome	156	Y
F081267	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208052_1011402	F081267	AGGAG	MSYEYHWVVVYDEDWGAFMVDVETTLLNLSEHPGVIYNKTTGRWEFAEEGSELEAEYQRLEEILAYNLTRLDLTAEIG
Ga0208052_1011406	F016662	GGAG	MTYLVATTEVIYSEEALIKMMLATGEYGIHGHPISHEAMIEFVKDQEWQIEHHLFLDKYDVPAQISIKDEDGTDLFFAKNRLEIV
Ga0208052_1011407	F043404	GAGG	MIDTTDELLNELAYHFVDLHNVGGIELEQWDTAYQFVKHFYNTEEVVEIRIGSKK
Ga0208052_1011409	F008496	AGGAG	VEFTTSEPTFGIPATITPMTDQVAVTPAYDPKATILVRKGYYYGSPSDAKYDLENADDISRTYWRVDALQSTNSSNSRAQDKLKEYLVENYDEIGEEHATEIANIFGIDLSKTVDVEFSVTIKATISVPMNTDVSDLSVYDFDVEISSSEYEIDEYDADIDSIDERY