Scaffold Ga0207910_103088

Overview

Basic Information

• Taxon OID: 3300020489
• Scaffold ID: Ga0207910_103088
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 21JUL2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1937
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F016662	Metagenome / Metatranscriptome	245	Y
F030094	Metagenome / Metatranscriptome	186	Y
F043404	Metagenome	156	Y
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207910_1030883	F007525	AGGA	MKTYEGVTVEYKEVIPTSRQMPEFYVWGEGYESYATIRYQDRVVEVERGGEMHLTLPYLVNGELTDEGADIIRYSDHLYAEGINDDIQLLQYIKTVGNSGFEIYRMNPWWEVFSHNEDMGEVYDTFYEAIDGGIDYILDDRNW
Ga0207910_1030885	F093864	GGAG	MYEYNVEFVLESMVMITSVSFDERPTDEFVIEQARQHLINSYKIDPEVMYLQDVIVHERD
Ga0207910_1030886	F030094	GGAG	MKLRGIFEGTFESVWSMEVPQLEWDSYLDKNPDFDENDRDDIEEMWDYFKRVVGCYDECDDSIDTEIHMTGIETYGVEVEIN
Ga0207910_1030887	F016662	GGAG	MTYLVATTEVIYSEEALIKMMLATGEYGINAHPISHEAMVEFVKDNEWQIEHHLFLDKYDVPAQISIKDEDGTDLFFAKNRLEIV
Ga0207910_1030888	F043404	N/A	STYKRIIMIDTTDELLNELAYHFVDLHNVGGIELEQWDTAYQFVKHFYNTEEVVEIRIGSKK