Scaffold Ga0208051_100273

Overview

Basic Information

• Taxon OID: 3300020488
• Scaffold ID: Ga0208051_100273
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17OCT2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6800
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F005092	Metagenome / Metatranscriptome	412	Y
F014496	Metagenome / Metatranscriptome	262	Y
F071231	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208051_10027310	F005092	AGGA	MNRKKEKMDKLDYALSAIRSCFICEGRGHLYWGNGEDYDTETCECNTYDIILDDDGDVIWDNGLLSEPELAIFGSKEAN
Ga0208051_10027313	F071231	GAG	MMTRKDYVKTAEILSNYFATSVFDEQGEMLFADLVDEFSLMFESDNERFDANKFALACYKKIEVDA
Ga0208051_10027321	F014496	AGG	MKTYSIPDLLVGQTYYPRSLARKYQYGEINYATKRDDIYLYGDYEAYAIRFNGNRWATIAVRVGE
Ga0208051_1002734	F000684	AGG	MTLGGYTYQIGDLFTTSKTGITGRIASFEPMSNKLTRVSLVLANGSRRLAMVKTSK