Scaffold Ga0208051_100109

Overview

Basic Information

• Taxon OID: 3300020488
• Scaffold ID: Ga0208051_100109
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17OCT2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9920
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004314	Metagenome / Metatranscriptome	444	Y
F015704	Metagenome / Metatranscriptome	252	Y
F027748	Metagenome / Metatranscriptome	193	Y
F029368	Metagenome / Metatranscriptome	188	Y
F085368	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208051_1001091	F004314	N/A	MYDDYDLDYTFSNDYGQDLDEYYAQDALDLDEDYARDGQDYESLAYRHYA
Ga0208051_10010918	F027748	N/A	MTYAQITASELSASEARVAIFDLADDFSWETVAREMISRMSGDEAREFVEDFISLYAD
Ga0208051_10010920	F029368	N/A	MRYNPATDRALSIDEIAAQCRAAILKADERRYVDQVADRIYDEILTTARWEDDLLIAA
Ga0208051_10010925	F015704	N/A	MNATFSDILWNCTDPSNGTIPWSTACQAAKEHGLWDDFRTDYGVTARFGPVDTGEFLVWLGY
Ga0208051_10010926	F085368	AGCAG	MTIFPLAMCSDLETRQIKWISRADQLKNGSRPSSYIHWGLPATTIAAQYAEAHADEGRGVQWR