Scaffold Ga0208200_100349

Overview

Basic Information

• Taxon OID: 3300020487
• Scaffold ID: Ga0208200_100349
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13AUG2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4900
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F005054	Metagenome / Metatranscriptome	413	Y
F020693	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208200_1003491	F020693	N/A	MIRTIQGGYKLATTVYDVEEITLQNGDKVRLKPLTIKALRKFMAAIAKTAESKTEDETLTILIDACAVAIELQLPELANNREAL
Ga0208200_1003493	F000258	GGAGG	MTPDYKLDAMFELRKFLWSKFLSAGIFDNEEYYSDNLAETIVPIIPVQQAPEMNQFLSGKKHIVYDKIGTSYEDNWMVCCEQILFTIYSTDFSEINEIRNFMMDEFRRMDDSARDVNRYSGLSDKFKFYSIFIADISPTEPSQELQGFLSTDVILEVKYSRMVDPVGRFL
Ga0208200_1003495	F001229	AGG	MNDLIDSVLSMKMDVYRQSDAQNPDTGAIIKEWNYYKTLDCHAKGVVSNSATTRSSDKQVFDNRYLNDQIIQIRTSERLILREKITNVRDNEGNVIWAEINFPTETPTVFEVIGTTPITDPFGRVIGYNSSMKRSENQQIGL
Ga0208200_1003496	F005054	N/A	MEILLGTNSPVKHKIFWQGEIRDADSNPVVKLFDITEDPAVNPAINPITILETLNSVKLENDIGTYVVYIPFEYTNRHRELRLSWIYSVDGVTVFKDHKLEVVTPYTDIAQSMDVLGVGTDPSDPNYKTYDQLLEAERYARKKIEAYTGQKFSTYDNVYVTNGYGSDTLPLPEKITDLHELYANDILLLDNINEINNWNYTVEISTTGYGIRVNRANSLDNTVYTANGMVPPSIHDSNGIFQDNVSYKVQGRFGWNEVPDEVELACIELMKDYFSKDKIWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLSDYVMVSKVQVI