Scaffold Ga0208698_103148

Overview

Basic Information

• Taxon OID: 3300020486
• Scaffold ID: Ga0208698_103148
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20AUG2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1464
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008069	Metagenome / Metatranscriptome	339	N
F037571	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208698_1031482	F037571	N/A	VEVKEDCIFIRLRKEVVCDHEGSDKGVPSSVPVPVVEEVPVVGSEVVDSLEAIPEDLVFESGEACSLEGVDNIPVEELYGGSQCDGSVTSSGVAS
Ga0208698_1031483	F008069	N/A	LRSGRKINISVNTLPIKYSGAIRAQWKTLPVPHQPTVTPKKPSTKRIATIKTPNTPYYVEEQLLNQDSFLFSTSIELSVNKIRPERNYKTRYKSSFQSDRKGILYIELPKEENSNKKVRFSRLEIKFY