NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208049_100259

Scaffold Ga0208049_100259


Overview

Basic Information
Taxon OID3300020484 Open in IMG/M
Scaffold IDGa0208049_100259 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 8OCT2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4271
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005173Metagenome / Metatranscriptome409Y
F007682Metagenome / Metatranscriptome346N
F098728Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208049_1002591F098728GGCGGMYVIVAPGWSELSFRSELVAGDAWRFCLLLINLVIDDVVIKAVVHVHVSKANMALNVALSIAKICTGQHDTMQNIMNPNAKIATAQVTIFNAVLDSVIFSNLMSVGSNIVISLIFAAF
Ga0208049_1002594F007682GAGGLTIYCRWFRRSQHLEEDQEPLLERMRLEHKRDDLESRIGYLEADVAYLRSDYLFLNDGDKKDAMFATICGLDREIEQLKSELASVNSQLSYY
Ga0208049_1002596F005173GGAVTRMRLDESADGHFSYGPSLGLFREPFINERYLFGDSQYHNCKPYLDMEKEFFSDNAAIVREVYFDTDILLGVDSDEDLGVEEAVNAEDLVPVLSAEEIQWQHAAANDILNMEIVRVTPVNSDSEDEETMERVASPVVVEAVSDVTDTNEATGSADNVVNNSPNLVIAEEGDYVEEAVEGRADVPSGPGPFSEDVTMDDFLPRPTRGSVVFLAFSDW

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