Scaffold Ga0207418_101678

Overview

Basic Information

• Taxon OID: 3300020483
• Scaffold ID: Ga0207418_101678
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05AUG2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1922
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001781	Metagenome / Metatranscriptome	635	Y
F005504	Metagenome / Metatranscriptome	398	Y
F013184	Metagenome / Metatranscriptome	273	Y
F020171	Metagenome / Metatranscriptome	225	Y
F033433	Metagenome / Metatranscriptome	177	Y
F084239	Metagenome / Metatranscriptome	112	N
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207418_1016781	F005504	N/A	TLEYEEETGWGGEYEIVRGEVKELLEYENRCYACQSFDTMSYCEDDCGEFCSECNEGSWQDEKAMAECQTHKVLLPLKTYTMEEAING
Ga0207418_1016782	F020171	AGGAGG	MAEQFIDTVAEHITGAMQQEIGEELFDQWSANNLDEGEAYAEWQFMKYASDDLKQQYNEYYGYIEGDEYLL
Ga0207418_1016783	F013184	GGAG	MKYYNFVIKLAGSVYARNEEEANEKINLHLDDLGQVESAKFDLHWPDVSWDLEYELC
Ga0207418_1016784	F001460	GGAG	MLGYTESDLNRMINAIHDSKLFYLRTPSDLMDKTELRNDLEMAVSFMQGLWAEGYFD
Ga0207418_1016785	F084239	GGAGG	LTKSSRFMEYMKLHLISLEQDLEKIDYVNGHHFYRVKEAEIETTRHLLSVATDIMNSSNERVYE
Ga0207418_1016786	F092053	AGG	MKLSSEVKEDLQDQADQIIYFESAMSNEDKASKAVYQRLTEIYKVAYEAGVNSK
Ga0207418_1016787	F000263	AGGAG	MMTPEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLASALEQETLSEEAMDSMVRTECEGRLDMLVELYNLTYQLSFAIGARDV
Ga0207418_1016788	F033433	GGAG	MYDKPSLEILEVNYSISPGGIDEFEVYSLDERDHSNPPIFSATTLEESVRFCYNLGKDFTVRTLAQWEEKELAYEASR
Ga0207418_1016789	F001781	AGGA	MKPADKDKLNECLKILDTTDLGLSLVWLWTWSTINNILDDETYRASVTQDDMWGHLCEAVEAGHGFSLEYGAEQHQEDVLEWMMNREYIVDTM