NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207418_100468

Scaffold Ga0207418_100468


Overview

Basic Information
Taxon OID3300020483 Open in IMG/M
Scaffold IDGa0207418_100468 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05AUG2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6076
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001106Metagenome / Metatranscriptome776Y
F001229Metagenome / Metatranscriptome741Y
F035307Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0207418_1004683F000258GGAGGMTDYKADVMIDLRKYLWSELKANDIFVDTDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEENWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDESARDTNAYSGISKKFKFFSIFVADISPTAPSEELAGFLSADVILEVKYARHIDSSGRFL
Ga0207418_1004684F035307GGAGLDNSSLLVTAASGLQKGMSGTKGKILKDSTVAQISAAVYYQAQVVSKLATNKAFEKKFQSVIFNQIEQDFGLYVDSQARVNPKSLHHMYEWNKTGSKSARLFNLTMMPASGLSFKIVSNFLPSKSSVPNNFGKRKHVFINKASVIEAGMPLTIRPRYAERLVFETNTGVVYMPKGASVTVTRPGGGKATGRFQIAYAQFFTGNLVNLSIKKSGFQKIFNSSLTKAMRVPSDVRKVKYSFNANTLNMQAESAIASAFGGAA
Ga0207418_1004685F001229N/AMNNLIDSVLSMTLDVYRQFDTQNEDTGAILKEWHYYKSVSCHAKGVIGNSSTSGSGDKQVFGNRYTNDQTIQVRTAERLTAREKVTNIRDIDGNVIWVEINFPTDTPTVFEVMGTTPITDPFGRVVAYNSSMKRSENQVIGQ
Ga0207418_1004687F001106AGGAGMSFETLKVAELRKIAEDFAVDTDGLKNKADIVAALAEEGVTWSVYQKTIQDIEKAADEFSDEAEEILPRFNPDSQPENTMLVRMTRDNYRYDILGFTFTKEHPFVAMTSEDAQEIFDKEEGFRLATPKEVQEYYG
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