Scaffold Ga0208464_103403

Overview

Basic Information

• Taxon OID: 3300020482
• Scaffold ID: Ga0208464_103403
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13SEPL2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1208
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015585	Metagenome / Metatranscriptome	253	N
F016361	Metagenome / Metatranscriptome	247	Y
F070035	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208464_1034031	F070035	N/A	RAELTEQFIFLINALAHGEYDDQYSVWRDEILDVVYQLIRIDTNWRLKVVTKDCGHIIIRHEECTCDEPFHYKTKIERRRVSRPRKRVLPTIPQLIEKRDSNVRDLLFMINESVVDYDYPRDNITWVMELRRIIQRILDIDPSWKLECIRAPAQCMKIKREQCNC
Ga0208464_1034032	F015585	N/A	MAKIRLHLYSKRLCIRYRLVKLKEVKMSPKNTERNQRLIKVINHCSRIAESKEVRELQLSPQLGELIKNLAGKGKEWSFILITYPKKNSEVQGKPPFEVKAEPGLSEEEKFYSSPW
Ga0208464_1034033	F016361	N/A	MCKKRELTEEPLINRVRQPINERSIQTLSQKQLALMALMDTMTVTMDTEKGKTVFREIVSIMKELENMNATCTCGLN