NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208201_104222

Scaffold Ga0208201_104222


Overview

Basic Information
Taxon OID3300020480 Open in IMG/M
Scaffold IDGa0208201_104222 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1215
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039506Metagenome / Metatranscriptome163N
F046908Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0208201_1042223F039506GGAGGMTKYVKLIAKPDTWFKAGTEAFDYDEYGKRITLESYNKWLKSGSILARGIRVCEHDYELKLGYKLGEEREDGELCGIDEFDMTIVDDEKDIPWPKPLDPPTTTAEAEARQRKFEDGIRHIQG
Ga0208201_1042224F046908N/AMTDARTYYYDIYGKMEPDYESMAAYLLDEGVLFVTTAIDRCTQKECLGLCVLINDYFVPASDAESITYNELPKLYELYKEKQWDGVSQF

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