Scaffold Ga0208201_102925

Overview

Basic Information

• Taxon OID: 3300020480
• Scaffold ID: Ga0208201_102925
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1491
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F014847	Metagenome / Metatranscriptome	259	Y
F016528	Metagenome / Metatranscriptome	246	N
F028145	Metagenome / Metatranscriptome	192	N
F045700	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208201_1029252	F000962	N/A	MENQEQTQIMNAHVPEEIKSKYPHMEFRGKQRQMNDRTVMEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVS
Ga0208201_1029253	F045700	GGA	MNIRPSQCFECETGTYKDVTVNYFSQLSGGRSLVTKDVTIQRCDTCGAEIIDSKASQIIESNIERNFPGHYDKWKTKNKPRL
Ga0208201_1029254	F028145	N/A	MKIFLAFFINLALSLGTSILLYKLFKVDVSPTIISIGLIVAYMCLPQRFHDWIAEK
Ga0208201_1029255	F014847	AGG	MEFESNADILRDLMNQLHTLHKENARLLQKIEDLEKHNEELNRKLKSIQALFL
Ga0208201_1029256	F016528	N/A	MINNNELFAKVLADNPLPYHFGDKVNTNRGIGYISGYNFKDREKTWKFTIRPYGLPNYYIDVETVYGKVE