NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208201_102257

Scaffold Ga0208201_102257


Overview

Basic Information
Taxon OID3300020480 Open in IMG/M
Scaffold IDGa0208201_102257 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1710
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002455Metagenome / Metatranscriptome557Y
F039506Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0208201_1022571F002455GGAMNEEEFDIKDDRRTYYYNIFGKMEPDYESMVAYLLDEGVLFVSSAISKHNGKDCLALYVLINDYFVPASDGEEVTYDELPKLYELYKERKHDGVSQFVA
Ga0208201_1022573F039506N/AMKYVKLIAKPDTWFKAGTEAFDDDEYGKRITLESYNKWLKSGSILVRGIRVCEHDYELKLGYKLGEEREDGELCGIDEFDMTIVDDEKDIPWPKPLDPPTTTAEAEARQRRFEDNIRYIQ

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