Scaffold Ga0208201_102257

Overview

Basic Information

• Taxon OID: 3300020480
• Scaffold ID: Ga0208201_102257
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1710
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002455	Metagenome / Metatranscriptome	557	Y
F039506	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208201_1022571	F002455	GGA	MNEEEFDIKDDRRTYYYNIFGKMEPDYESMVAYLLDEGVLFVSSAISKHNGKDCLALYVLINDYFVPASDGEEVTYDELPKLYELYKERKHDGVSQFVA
Ga0208201_1022573	F039506	N/A	MKYVKLIAKPDTWFKAGTEAFDDDEYGKRITLESYNKWLKSGSILVRGIRVCEHDYELKLGYKLGEEREDGELCGIDEFDMTIVDDEKDIPWPKPLDPPTTTAEAEARQRRFEDNIRYIQ