Scaffold Ga0208201_101150

Overview

Basic Information

• Taxon OID: 3300020480
• Scaffold ID: Ga0208201_101150
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2416
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013886	Metagenome / Metatranscriptome	267	N
F044443	Metagenome / Metatranscriptome	154	N
F090299	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208201_1011502	F044443	N/A	MLNRIIEQFKYKLYTALDYLTVVSFMYLIIASLVFAFRHPWATDMERFIHIGDALMFNKISYKEMREEYEKR
Ga0208201_1011507	F013886	N/A	MNNQDKPNAFAFKAKVGESKEIQLCICIRENDKWLENEIFSIPEGHPELSPYIDEQLFNIVFIGYERDENKEGFWIKHQNSFYMKSDTILTEDLLNNGEFFTTIEKGYQSFYEQSITSEREGEQTSSSEQENL
Ga0208201_1011508	F090299	AGG	MKKVIVSKVEYEFLVSLLEELYIISPDETISDKWISKLEPTKKLFDLELEFYNIRNDGQTPTKKEMVKWLLEKIKNKNLDL