Scaffold Ga0208201_100260

Overview

Basic Information

• Taxon OID: 3300020480
• Scaffold ID: Ga0208201_100260
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4771
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014838	Metagenome / Metatranscriptome	259	Y
F020529	Metagenome / Metatranscriptome	223	Y
F022636	Metagenome / Metatranscriptome	213	N
F041152	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208201_1002604	F014838	N/A	MKESLKKIEELKNQLNTVKSELQKEFKAELKKIFVDNPTLDSVEMYINNHEFNDGGATSFYIGYEDLKIVVEGEEVEREWDNATKQYKPNPVLESLIELFGDVHCIHEELYGDEYEHLSITREDVLNY
Ga0208201_1002605	F022636	N/A	MSTYRRATLQDLAKLGYVPNTQKYKEHIEFARKYYPPEATTMVMSIHSEYNDCTYDNSFQYIIVYDMDGNELPPLKKTAKECREHWTTEYLPIPNTRDDNYGSAESDEPLDDVVIPLTTEVPELYIKES
Ga0208201_1002606	F020529	AGGA	MFNNKNIVKYCAKYFVLTTLGAYIFNLSASMINQKSDVANLIGSAFFAGLFVGTVVILKSDVTKLVKNINKTENKENE
Ga0208201_1002608	F041152	GAG	MNIVDYIVKNWDTLPKSKFDDDHIVIFKEIENWDGGYGHHSYEGVGVDKDGNVTWCYSSGCSCSGGPSLDTKKDLKVFVVNDGIDLNVDPSTINFNSLQVEFDSY