Scaffold Ga0208201_100033

Overview

Basic Information

• Taxon OID: 3300020480
• Scaffold ID: Ga0208201_100033
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10072
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.85%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F006546	Metagenome / Metatranscriptome	370	Y
F009264	Metagenome / Metatranscriptome	320	N
F009402	Metagenome	318	Y
F011579	Metagenome / Metatranscriptome	289	Y
F027178	Metagenome	195	Y
F037694	Metagenome / Metatranscriptome	167	N
F045702	Metagenome	152	N
F054024	Metagenome	140	N
F068462	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208201_1000331	F011579	N/A	VPASDAESITYNELPKLYELYKEKQWDGVSQFVADKRGIPDLHWRDKNSAFQKKLDLL
Ga0208201_10003311	F009264	N/A	MRAYLEFSLMDDEVDHLTKIGFGAKILDAYEMENGFVAVVVDWNSKTGSHKLKYASQGCVTYSSDKIVGVELEFRDYPYQIDDCQMNPRISVKLDYDDFNKKMDYVCFQNLKYQAIVYFAPDSWNCSRNSKKIKF
Ga0208201_10003315	F027178	N/A	MKTNMQKYVVMIKDGGKWEEYARFKSLDLAKVTLELVKKDFPAKIIELK
Ga0208201_10003316	F054024	N/A	MSDKYSNHFYIEGPYDDLVNVTKGLDFAEGSINYDGWEIEGGSAVLHFDGYFCPLDEAANASVKYPSLKIIFRFTHELLTAGLYIYDGGKIKLRSYYDWDTGESSVKKYD
Ga0208201_10003319	F009402	N/A	MKKLEKEFESSSFKYKQIHRENMFAIYERHHISSDNKHYEAIKIQSHNGYEIAGNKIPPSECYPTSNSWGTQGYTCLDKKAAYNRLDRMMKEDVRNKEIANKKAERKKAK
Ga0208201_10003320	F068462	N/A	MSDITYTWKVNNVKCYKDLNGYQDYVYQTYWNCAAATLGPTGQAYDSSFAGATPLGTGAASVSGYAFKPFIELTQDDVLNWIWTSLPSGAGKEYYEQKVSGELVYKMTYVTEEPALPWNPPAPTGTP
Ga0208201_10003321	F006546	N/A	MKWKYIGNRAGDATKGEQYIVEADELTEIYMKEMPYPQFVKVYVVQPPSPRKNFMTMKVGDIVKICNPYYDMQHYSHPGFVPVKE
Ga0208201_10003322	F037694	N/A	MLNKDQAFLVNEFIRKNATRNLWEVSDKLYTLLSEIKKIEELPQNNETQIAAA
Ga0208201_10003325	F045702	N/A	MTITQTLNRTAGRFTTLVVNKGAANNTFCAQITGATEKTVRFYDVNADANRVVPTSSVVYARSGKVQYRKPRK
Ga0208201_1000338	F000962	N/A	MNIHAPEELKIKYPQYEFRGKRREINDRIVIEAYNPVTEQTFFYSFEEDFFWMAGQIPDYKLQKP