Scaffold Ga0211503_10173405

Overview

Basic Information

• Taxon OID: 3300020478
• Scaffold ID: Ga0211503_10173405
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1226
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F090847	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_101734052	F090847	N/A	MDEFEIEWIPEDTGAPYTEADMMEPMLSDIPAHTVDKICKKRYGHTNWARLSQMTPTDLIGNPCEIDYTEGIIYFKNAHRV
Ga0211503_101734053	F000720	GAGG	MTLIKENTKVRTELPNRMRSTTFTLPVDDRKVIGIVNYTVDTDGIQPQALWVKIKPTDSYLDRELRASGKLVSRLMQHGESLKDIVDTLSQDNIIGHMVNYFSKNMEDIIMGAPMDKKQRMLSTDPYAMKE