NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211503_10075733

Scaffold Ga0211503_10075733


Overview

Basic Information
Taxon OID3300020478 Open in IMG/M
Scaffold IDGa0211503_10075733 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2028
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_034
CoordinatesLat. (o)18.49Long. (o)39.8483Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006383Metagenome374Y
F015346Metagenome / Metatranscriptome255Y
F059941Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0211503_100757333F006383GGAGGMLDSSNKMWQVQQPGTILRARHSARRGQLALVLARSYAGPRPSNGYPPRRYVKMQWISTGERFEEMLVNAHNCFDIVSSCDNVKTEKNNDNYAKV
Ga0211503_100757336F015346AGGAMNPEWKHYRVGDLVLAGTSRVPGLVTKSNYWALDEYLGGEIECIDVMFGGHESKQYPVQYLETM
Ga0211503_100757337F059941AGCAGGVKLGTLVQFKAYDIVLDSGYVSKYDEDPEMIWVNYSKMGPQRVHLDSTMMEVVSEAR

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