Scaffold Ga0211503_10054078

Overview

Basic Information

• Taxon OID: 3300020478
• Scaffold ID: Ga0211503_10054078
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2479
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F101853	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_100540781	F001235	AGG	MATKLDNNSQSNDLTKKLWETHQADEYTHVDNYKEAICINCFKRDVSIATICDICGDCAGKRGREPLLAKITDKYYGLCYFCGKYKFNIEQINARFCKTCHGRIAKVMKDYNKKGGMFGADPFWVKMRKRHGKDWMHIMNNNLGNKR
Ga0211503_100540786	F101853	N/A	MNVARSAARISGNFGVSFFSPLVGGNVAESIYDVGVSFEMSIVIALISAAFVTGLAISKEASEWGKQNDKKRR