Scaffold Ga0211503_10042393

Overview

Basic Information

• Taxon OID: 3300020478
• Scaffold ID: Ga0211503_10042393
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2875
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F078839	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_100423931	F078839	AGG	MKEERLISSIVMITFLFLWFIVLFTFGLLVYQTSSYQGQVDDLIKEN
Ga0211503_100423934	F000245	GGA	MKTYSRFKEGSLDDKLDKYVSNEIKKRKLAKFPVNATDDYKMKKGKPAFTFPSPTGEMIIKVWLRDMAKIRGKAPKDMKAFNYELDDK
Ga0211503_100423936	F002715	AGGA	MAEGKELQDVKLEVGLLKNEVEARGKQTEVLLSKLDLTTDKLQQLTVQIIKLNTRQEDHLKHDTTVRDELKILHTRIGDLHDKQLSAQKEIEQRLDRLDQYKSKLMGMIVVVGGALGVTVTLALHFL