Scaffold Ga0211503_10030456

Overview

Basic Information

• Taxon OID: 3300020478
• Scaffold ID: Ga0211503_10030456
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3499
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051452	Metagenome	144	Y
F083236	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_100304567	F051452	GAGG	MHRIFSMSTEEIIRNRMNRAMSSKGKTFFWNPTSKFHVKRKIKDVRLTFGGNVELTFFAPLPSKTSRLFTIEPTLDCMDSFCIAE
Ga0211503_100304568	F083236	N/A	MVIHIGDLIRLSGKTRHGKNRIREHGDLAEVCHIDGVLNAINKFCVQHRHGDSWRWIDLPDDEHMNWEMVEKNDKCHFDNFQ