NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211503_10022339

Scaffold Ga0211503_10022339


Overview

Basic Information
Taxon OID3300020478 Open in IMG/M
Scaffold IDGa0211503_10022339 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4215
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_034
CoordinatesLat. (o)18.49Long. (o)39.8483Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017050Metagenome / Metatranscriptome243N
F018269Metagenome236N
F073156Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0211503_100223393F018269N/AMKIGINLVGVSYNNAIEGGRLRDYENSIQNFYKNVVNPLRKDGHEVKFYLFSYKNEKQDKIVEDYSPAIKHTFIEQQLNKLGGGDRVGNGMKVMTVSYLNSLQQLYNQDLDLVISTRYDINFFRNPFEEYDYDFTKCSFLWREPEFMDLPIVNDTFIVFPYSMLESFFDAVLEMETNPPHGVNSGMHNLYLPMVNQVGEDNVVWLDDEFKSAVDNSLYKLERTE
Ga0211503_100223396F017050N/AMSKLISGYLWAWTEWEAGKKSMQTLKKFYPDADLFINVDYDGDIENYTKVGKEIGATVTRNNFQVGYPGNFGDRDIGYEHWTKEKAVEWLRGIYDACKKTDSKYIMLFEEDDFVLKPISILSEEFSMAIHPTTPSPTGRMRANYIPGQYFDYSRHVGGVDNCPGYASGGGTIFNRVQYMDSYERALDLYLKPFDDFTKINKIYGWQDFLFQYVMMLAGYEIIQNTKLCEHWEVPNYEELGIEILTACKDHNLIKL
Ga0211503_100223397F073156N/AMTILGCITKYRPEDIRPYVESIHQSGFKGRKVMMVYDIPQETIDYLKSKGWELYQNELQQHIILQRFRDIYKLLEQFPKDETIIWTDVKDVIFQKDPTEWIDYNMDDEIMAFSESITMKDDPW
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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