Scaffold Ga0211503_10016834

Overview

Basic Information

• Taxon OID: 3300020478
• Scaffold ID: Ga0211503_10016834
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4983
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020189	Metagenome	225	Y
F024198	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_100168341	F024198	N/A	IWNREILNLLNNHRYQKMTENFYRVLASTKTRDPYPVYRFYREPSDWHCNGTVKVSCKDGRVNVKIFEKDSINVHHLEVYADGPVTARLTEQTSHPDRP
Ga0211503_100168345	F020189	GAGG	VSENIVYYSYKMSPHDHVNEHEMKRFEHSISTLRKFNNEIPVYLFCDNPDYIREHTVLESLVHIRLFEEQVNHGMLFIYRWFNLKYFDDKRNILYVDSDTIFYGDVEYIFTHYNYAEVFGREEFGFRHDPNVGGGRKIREALDYVDECIVKAGGQQIYKYCMGVMLFNNGIHLEIVDRLGELVELMCKLRNGTIPYPVPNPRIVDEYAMWVILSRIGVYGALFGPQDVTQGYVEQKHQEFFNPIVLHYTTKGEQQLAQDEERFSNLLRDVDEFSEQIDPYSVFDFPGGGGGP