Scaffold Ga0211503_10015051

Overview

Basic Information

• Taxon OID: 3300020478
• Scaffold ID: Ga0211503_10015051
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5319
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002146	Metagenome	590	Y
F020878	Metagenome	221	N
F042856	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_1001505113	F020878	GAG	MIINLFGKQITINNKKWKQDLLAWSLYYRTEIVIAIAAFILGAIIF
Ga0211503_1001505115	F042856	GAG	MNKQIQQQQNLRELARLTFLNLMSANGVMAKTIIRNYKQKQQRESYEKSRYVQKT
Ga0211503_100150517	F002146	GAG	MIKNILNFLDYVLFLVMIYFCYLGLKYAPQIEQLIIELKGGVI