Scaffold Ga0211503

Basic Information
Taxon OID	3300020478 Open in IMG/M
Scaffold ID	Ga0211503_10013478 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020478 Open in IMG/M

Scaffold ID

Ga0211503_10013478 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5692
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5692

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_034
Coordinates	Lat. (^o)	18.49	Long. (^o)	39.8483	Alt. (m)	Depth (m)	60
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_034

Coordinates

Lat. (^o)

18.49

Long. (^o)

39.8483

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F006222	Metagenome / Metatranscriptome	378	Y
F012779	Metagenome / Metatranscriptome	277	Y
F039872	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_100134783	F012779	AGGA	MTEELNNSEEATSSDKNWKEMREKLELYEGKIAEFEAKERNQVFQSAGLDTTKGVGKAVEMMYEGDMTVEGIQAYASQEFGVEFGQQDRLQETVQSTEQSQERLNNIQANSVVDIYDNDVLGQVREIEKSGNIRDSIAAKLSVIEEAKKNSK
Ga0211503_100134785	F003693	AGG	MISKTALIDVSEDNNDSLAVRTDGMLLCGIEFPAAMTGSNITFDFSMNGSSGWVDVFETDGTEVSYTVSAGNMVRVDPSGWAFASNGYLRINSDGSEAADRSIVLHFRHS
Ga0211503_100134786	F039872	AGGAG	MSNIGDLVDRVYREYLEPMDDLVSYTTLSTGVNDSVTSVVFDGDMLSIEEEDALDKGTVIEINQELMICTDLNTVTNTITVKRGAKGTTAAAHTAGDIIKISPPFPRKNVFDAVCDQIKNLFPTLFAVDTQSITTGTGYTLIGDYSSPGTHNYIVSILGAISQYTDFSAGSDTTGVNFSPVTCSLVELPNPFTYTDSDGVSRTMTYSTGPSTVHAIQFAGIASGHTAYVTFKKKFIEPTAEDNTLAEIGLEDEFVPIIMAGVAAQMMSGRDIPTATADYISEQLAVSTYPVGSSNSIRNSLLQYQQLLMNQARKYLRAKYPEAVSVDGMVYGIQA
Ga0211503_100134787	F006222	GGA	MPRVATTINISNPKRYGYDLRLDNILLRTAVGGGREMVIQSTDVTEQGVNVKQN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211503_10013478

Overview

Ecosystem & Geography

Associated Families

Sequences