Scaffold Ga0211503_10004769

Overview

Basic Information

• Taxon OID: 3300020478
• Scaffold ID: Ga0211503_10004769
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10523
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F017844	Metagenome / Metatranscriptome	238	N
F031648	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_1000476913	F031648	N/A	MVELNHNVISFNSDTAVKGSHGVVVAVFCSKKGSSGAKCIFKNGTSTSGATEFTIFGETEGNYQDINRRFESGIFADVTGSAEWTVVFK
Ga0211503_1000476914	F001625	N/A	MAVTVSTSDWTAANVRKTLSWQAALTSKLRIYKVKVTAGGSDAYATNGVAADLKEGRISTLVAVIPEFTDSLYKVEYDKANEKIKLYSVGGSAGATFAEVANSTSIANKVFEFLVIGY
Ga0211503_1000476915	F017844	N/A	IGRLFALDTSDAEGYGYPRIGIQIAIPTEYYEATRRSAGYPFINNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL