Scaffold Ga0211503_10003766

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211503_10003766

Scaffold Ga0211503_10003766

Overview

Basic Information
Taxon OID	3300020478 Open in IMG/M
Scaffold ID	Ga0211503_10003766 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12033
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (70.59%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_034
Coordinates	Lat. (^o)	18.49	Long. (^o)	39.8483	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002682	Metagenome / Metatranscriptome	537	Y
F006589	Metagenome / Metatranscriptome	369	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_100037663	F002682	N/A	MGKGKLIGSDEKPITFRSPIYKNTHGSKGANPRPGFYTQDYRDNWDRIFNKKKTEDTENNNDND
Ga0211503_100037665	F006589	GAGG	MLRDRLEKRVNSIIETNDLTDMQVWGIWCGIGFISALIIMWIV

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