Scaffold Ga0211503_10001599

Overview

Basic Information

• Taxon OID: 3300020478
• Scaffold ID: Ga0211503_10001599
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19543
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048926	Metagenome / Metatranscriptome	147	N
F090267	Metagenome	108	N
F095339	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_1000159912	F048926	GGCGG	VDYDEIRAELKTRLEAVSSPQAFVSVYDTVPDFLTPPCAIVVPSSNLISYHEAMGTVSNSLKTLRFDIVVVSQRFETASSQELLNDFLGTVPTALEADQTLDGTANSVTVVSATNYGPLNFADSVFLAVQLDVEVTAT
Ga0211503_1000159915	F095339	GAG	MLGSDIRLQIEPPEGDAYTVAISLKTAIAFEREFKTTLSGAFSQDPSIEHIAWLAWTATKEQGRVVKLFDEWVADLKDITLVEDQPDPLVEEVPPMQSQG
Ga0211503_100015993	F090267	AGGAG	MVENGRHREAAEIVLATIPNANAVLASALRGIADAWDKCEIGVYDARLITGLAVQLFQCLDRLGVEADSDVWEQLSKELSK