Scaffold Ga0211503_10001114

Overview

Basic Information

• Taxon OID: 3300020478
• Scaffold ID: Ga0211503_10001114
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24141
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (65.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F043442	Metagenome	156	Y
F077769	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_1000111413	F077769	N/A	MGSKIKAKYDGSCKICGSVWNVGDDLYYQKQPRATCSEEECFKQQGGTVKEYVVRKDDVIITRIPEIDVQDSVKQVADTLQQYIVVAHHLTKSLYPELDINTHTFGQIRSKVIDQLLYCTDIQKQ
Ga0211503_100011145	F043442	AGGAG	MIIYFNGNNKAHMEALQDCKVKNVVLSFKYSYANITKFRDKFDKIFVVAGTKTEPERYYELLKKHRELYDYATQFDVFYKMDETLKHLENERKMGIDWTLPVLQENYLHHLSRLKLEPDSYVCLGEVKGRHDTEDQIRKLPSNIKFHGLAKGRYMNYNSPNFYSFDTSGWISAAMTKKCEVWNNRSTNFMFFGEKGKSMIPMLNHACEVHKEYLDIVGLKKQDVIDGDYNALLKIPFALLYLPMCKQLGILKENFNL
Ga0211503_100011146	F001066	N/A	MLYMADEEIFKIKPLDKNATKVVVNGQKTVSPFNSAKHLKTANIPALCDQCVYRSIEDGGNGKCPKYEKGALCAIRKDFIEMINQLDTRDPEAVKTMLDMLAKLSFENVLMALTESKFDGNIPDRNTKSEINTLLKIISTIGEISNKIVVSEEKRYDKKGDIESIFRQIKAQKTGD