NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211585_10290689

Scaffold Ga0211585_10290689


Overview

Basic Information
Taxon OID3300020477 Open in IMG/M
Scaffold IDGa0211585_10290689 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)985
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.9103Long. (o)-142.5767Alt. (m)Depth (m)140
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022974Metagenome / Metatranscriptome212Y
F056894Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0211585_102906893F022974N/AMSFVVVVFGLSELVNEKGDNMERETYYVAKLMKEGEFLSSEIFESMEEARLWAMKETKLLVSDSYLRRCKADDIVVEIDEHFFGYECSVGELLKNSERVL
Ga0211585_102906894F056894N/ATETPKRLIMNLGMRNGKMVGTTELNERMNGATVLARLTEYGMSAFTYANETQAMRARDRWRHSVLNETLNFDVIRGSRVWFVRVSERERG

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