Scaffold Ga0211585_10282709

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211585_10282709

Scaffold Ga0211585_10282709

Overview

Basic Information
Taxon OID	3300020477 Open in IMG/M
Scaffold ID	Ga0211585_10282709 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1003
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_125
Coordinates	Lat. (^o)	-8.9103	Long. (^o)	-142.5767	Alt. (m)		Depth (m)	140
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008649	Metagenome / Metatranscriptome	330	Y
F023958	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_102827091	F023958	AGGA	MIKAQITDIIGAYEKIKTAKTAGLDFWEGFILILFILKDILIVGGILATIIWYLKEKKID
Ga0211585_102827093	F008649	GGAG	MNLQEIMTDVTNTLNHNGFDEVKVISNHTDFSLRVGYWEQLPASLIETMEEYHSIRITEHNWEDEDCGMLYRYVVEVVDEDCGYTLNELNELDSYTEEAMYLESIGADDVWGVA

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